Software packages
Developed by Paul VanRaden and coworkers
1986-2024
Packages:
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A set of programs to apply new factors for
age, parity, season, and previous days open to
compare cows more fairly within herds. Age-Parity-Season-PreviousDaysOpen Adjustment Factors and Software - 2024 |
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A set of programs for best prediction of lactation
yields |
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A program to find haplotypes and impute genotypes
from multiple marker sets and sequence data |
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A set of programs to align sequence reads to
reference map, call previous variants, and identify new variants |
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A program to check pedigree relationships and
discover additional relatives |
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A set of programs to simulate genotypes, breeding
values, phenotypes, and DNA sequence read depth and to resolve SNP conflicts
between parent and offspring genotypes |
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A set of programs to create sparse inverses for
dominance and epistatic pedigree relationship matrices and solve the mixed
model equations |
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A set of programs to estimate variances and
covariances by sire model REML using pedigree relationships |
This
software was developed and maintained at the USDA Agriculture Research Service,
is in the public domain, and may be modified and redistributed at will.